Interference model of strain acquisition

interference(params, data, pci_list, max_moi = 25)

Arguments

params	Vector of parameters including the frequency of each species and the mean moi mu.
data	Real data to compare model predictions to.
pci_list	Permutation, composition and infections list.
max_moi	Maxuimum infction composition explored. Default = 25.

Value

Returns a named multinomial probability distribution.

Details

For a given frequency of each strain and mean moi, returns the related multionomial distribution describing each infection type. `params` vector can contain extra parameters `k...` that describe the interference. See interf_dmultinom for how to format these parameters.