Wrapper for THE REAL McCOIL in Rcpp

Wrapper for THE REAL McCOIL in Rcpp, so that package can be more easily run on distributed computing services and cluster infrastructure.

Details

Rcpp implementation of THE REAL McCOIL

References

1 Chang H-H, Worby CJ, Yeka A, Nankabirwa J, Kamya MR, Staedke SG, Dorsey G, Murphy M, Neafsey DE, Jeffreys AE, Hubbart C, Rockett KA, Amato R, Kwiatkowski DP, Buckee C, Greenhouse B. 2017. THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites. PLOS Comput Biol 13: e1005348. doi:10.1371/journal.pcbi.1005348